The top level directory is organized in the following directories:
- Code specific to pysam
The documentation. To build the latest documention type:
make -C doc html
- Code and data for testing and benchmarking
- Source code from htslib shipped with pysam. See
- Source code from csamtools shipped with pysam. See
- Source code from cbcftools shipped with pysam. See
Importing new versions of htslib and samtools¶
Unit tests are in the
tests directory. To run all unit tests,
To run the benchmarking suite, make sure that pytest-benchmark is installed. To run all benchmarks, type:
See Benchmarking for more on this topic.
Please see github for a list of all contributors:
Many thanks to all contributors for helping in making pysam useful.