pysam
v0.19.1
  • Introduction
  • API
  • Working with BAM/CRAM/SAM-formatted files
  • Using samtools commands within python
  • Working with tabix-indexed files
  • Working with VCF/BCF formatted files
  • Extending pysam
  • Installing pysam
  • FAQ
  • Developer’s guide
  • Release notes
  • Benchmarking
  • Glossary
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