The top level directory is organized in the following directories:
- Code specific to pysam
The documentation. To build the latest documention type:
make -C doc html
- Code and data for testing
- Source code from htslib shipped with pysam. See
- Source code from csamtools shipped with pysam. See
Importing new versions of htslib and samtools¶
Unit tests are in the
tests directory. To run all unit tests,
nosetests -s -v tests
Note to use the
-s/--nocapture option to prevent nosetests from
captpuring standard output.
Please see github for a list of all contributors:
Many thanks to all contributors for helping in making pysam useful.